merquaco.data_loss.FOVDropout.compare_codebook_fov_genes

static FOVDropout.compare_codebook_fov_genes(fovs: DataFrame, codebook: DataFrame) → DataFrame

Compares genes in FOVs and codebook dataframes and removes mismatched genes from consideration.

Genes missing from codebook are removed from FOVs dataframe, since they cannot be false positive corrected

Parameters:

Returns:

fovs – Updated FOVs table including only genes in the codebook

Return type:

pd.DataFrame

Raises:

UserWarning – If there are genes in the FOVs table that are not present in the codebook, or vice versa.