merquaco.data_loss.DropoutResult.get_considered_gene_counts

DropoutResult.get_considered_gene_counts(fov: str = '', dic: bool = False)

Gets number of genes with at least 1 FOV considered for dropout. FOV is considered for dropout only if its 4 carinal neighbors average at least 100 transcripts. If fov is specified, returns number of considered genes for the specified FOV. If dic=True, returns a dictionary of considered gene counts for each considered FOV.