merquaco.data_loss.DropoutResult.get_dropped_gene_counts

DropoutResult.get_dropped_gene_counts(fov: str = '', dic: bool = False)

Gets number of dropped genes. If FOV is specified, gets number of dropped genes for specified FOV. If dic=True, creates dictionary of FOVs and dropped gene counts

Parameters:

• fov (str, optional) – FOV for which to get gene counts for. Default is ‘’.

• dic (bool, optional) – Whether to create dictionary of FOVs and their dropped gene counts

Returns:

• int – If fov is specified. Number of dropped genes for that FOV

• dict – If dic is True. Dictionary of dropped gene counts per FOV

• int – If all arguments are default. Number of dropped genes.