merquaco.pixel_classification.generate_damage_mask

merquaco.pixel_classification.generate_damage_mask(damage_mask_path: str | Path, dapi_image_path: str | Path, dapi_mask_path: str | Path, transcripts_mask_path: str | Path, ventricle_mask_path: str | Path) → ndarray

Generate and save binary tissue damage mask

Parameters:

• damage_mask_path (str or Path) – Path at which to save damage mask

• dapi_image_path (str or Path) – Path to DAPI image

• dapi_mask_path (str or Path) – Path to binary DAPI mask

• transcripts_mask_path (str or Path) – Path to binary transcript mask

• ventricle_mask_path (str or Path) – Path to binary ventricles mask

Returns:

damage – Damage mask array

Return type:

np.ndarray