merquaco.pixel_classification.create_transcripts_image

merquaco.pixel_classification.create_transcripts_image(transcripts: DataFrame, transcripts_image_path: str | Path = '')

Creates transcripts image from transcripts via 2D histogram

Parameters:

• transcripts (pd.DataFrame) – Transcripts table

• transcripts_image_path (str or Path, optional) – Path at which to save transcripts image. Default is ‘’.

Returns:

• img (np.ndarray) – Histogram of samples in x and y

• mask_x_bins (np.ndarray) – Array of bin edges in x

• mask_y_bins (np.ndarray) – Array of bin edges in y