merquaco.periodicity.get_periodicity_list

merquaco.periodicity.get_periodicity_list(transcripts: DataFrame, num_planes: int = 7, fov_dimensions: tuple = (202, 202))

Performs periodicity analysis across z-planes

Parameters:

• transcripts (pd.DataFrame) – Transcripts table

• num_planes (int, optional) – Number of planes to get periodicity values for. Default is 7.

• fov_dimensions (tuple, optional) – (x, y) dimensions for FOV tiles. Default is (202, 202).

Returns:

periodicity_list – Periodicity values in (x,y) for each z-plane

Return type:

list of tuples