merquaco.periodicity.get_chunk_values

merquaco.periodicity.get_chunk_values(transcripts: ndarray, image_dimensions: int, fov_dimensions: int = 202)

Calculates histogram and periodicity chunk values for transcripts DataFrame

Parameters:

• transcripts (np.ndarray) – Array of transcript x or y coordinates

• image_dimensions (int) – Size of image

• fov_dimensions (int, optional) – Field of view dimensions. Default is 202 (microns).

Returns:

periodicity_histnp.ndarray

Histogram values

periodicity_chunknp.ndarry

Periodicity metric chunk values

Return type:

tuple of np.ndarray