merquaco.z_plane_detection.get_transcripts_per_z

merquaco.z_plane_detection.get_transcripts_per_z(transcripts: DataFrame, num_planes: int = None) → ndarray

Iterates through z-planes and returns array of transcript counts per plane

Parameters:

• transcripts (pd.DataFrame) – Transcripts table

• num_planes (int, optional) – Number of z-planes to count transcripts in. Default is None.

Returns:

transcripts_per_z – Array of transcript counts per z plane

Return type:

np.ndarray