merquaco.experiment.Experiment.run_all_qc

Experiment.run_all_qc(run_pixel_classification: bool = True, run_dropout: bool = True, run_perfusion: bool = False, plot_figures: bool = True, save_metrics: bool = True)

Runs all standard QC functions and prints results

Parameters:

• run_pixel_classification (bool, optional) – Whether to run pixel classification workflow. Default is True.

• run_dropout (bool, optional) – Whether to run FOV dropout workflow. Default is True.

• run_perfusion (bool, optional) – Whether to run perfusion workflow. Default is False.

• plot_figures (bool, optional) – Whether to plot figures. Default is True.

• Set (Attributes)

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